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If you know the property name you should be able to use this code (Note: This is run from a test case teardown script, you need to tweak how you get the project object), just substitute the name of your project property:
def project = testCase.getProject()
project.removeProperty('TestProp')
The project object is the class https://support.smartbear.com/readyapi/apidocs/soapui/com/eviware/soapui/impl/wsdl/WsdlProject.html, the removeProperty method is specified by the inherited class https://support.smartbear.com/readyapi/apidocs/soapui/com/eviware/soapui/impl/wsdl/AbstractTestPropertyHolderWsdlModelItem.html.