SoapUI 5.4.0: testrunner.bat/testrunner.sh skips resources

I use simple project with single step in my testcase: POST request to ENDPOINT/api/users. And it has one simple assertion for 200 status.

When I run the test case in SoapUI 5.3.0 then I see results and everything is ok. But in 5.4.0 version I get 404 error because it sends requests to ENDPOINT/

It's not reproducible in GUI. It is reproducible via testrunner.bat and testrunner.sh